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Roy Pardee (KaPoW): to extend a bit on this: making data FAIR does not require public availability of data. Metadata publications are pretty common and one of the usual use cases of Dataverse. It usually is called a "registry" in these cases instead fof "repository". In our installation, we try to focus on the metadata and keep the data out - mostly not because of paranoia but because our institutes very often do not get storing the data longterm wrong and we see not much use in duplicating the data. Also, we have a lot of data that is rather large (TB/PB) and that is simply impossible to have a copy of. In these cases, metadata publications make up a pretty good alternative, as the data is at least FAIR and referencable.5:53 AM

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prsridha: manually? In smaller batches? One at a time? Using the API? Sorry, I'm not sure what you mean. 😅 Thanks for the screenshot! Is that from the demo server? Or your own installation?10:45 AM

Hello! One of our test servers fails to run the dataverse installer (I tried to install v5.13), due to
"Internal Exception: java.sql.SQLException: Error in allocating a connection. Cause: Access denied to execute this method : setURL"12:03 PM

Or could the cause possibly be that setURL is an sql function that is not defined in the current database?12:20 PM

I only see setURL once in the codebase and it's not a SQL thing:

$ ack setURL src
src/main/java/edu/harvard/iq/dataverse/DatasetVersion.java
1609:    public String getReturnToDatasetURL(String serverName, Dataset dset) {

1:05 PM

I think it is in eclipselink, org.eclipse.persistence. ....1:11 PM

Ok. So you're saying if I use the wrong password for postgres I should expect this error?1:23 PM

maybe, I will try to set the wrong password on my other test server...1:26 PM

Unfortunately, the password error is different:
FATAL: password authentication failed
for user "dvnuser"1:40 PM

Any ideas,

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poikilotherm (CEST,UTC+2) ?1:49 PM

setURL is coming from the underlying JDBC class and refers to some wrong JDBC URL1:53 PM

containerization working group meeting in 5 minutes: https://ct.gdcc.io1:55 PM

As soon I finish prototyping my smart DAQ with swarm capabilities I intend to take a peak at the dataverse source code to propose some improvements in regards to live data acquisition and open science ... Almost there6:30 PM

New logs for this channel! Check 'em out! https://archive.matrix.org/r/dataverse:matrix.org1:19 PM

I just switched us over: https://github.com/IQSS/chat.dataverse.org/pull/241:36 PM

Fancy pants!5:29 PM

I know right5:51 PM

My daughter is stage crew for her 8th grade musical, Finding Nemo Jr., premiering two hours from now! I'm off! Have a great weekend! 🐟️7:57 PM

@poikilotherm dataverse.files.directory is only used for temporary files these days, correct? I'm asking because I ran across target/classes/META-INF/microprofile-config.properties:dataverse.files.directory=/tmp/dataverse2:57 PM

No it's not!3:08 PM

a pre-existing condition 🤒3:39 PM

@poikilotherm if u hapi i'm hapi, just double-checking6:22 PM

Awesome thread about running Dataverse in containers for API testing: https://dataverse.zulipchat.com/#narrow/stream/377090-python/topic/containers.20for.20API.20testing11:51 AM

Community call in a little under 3 hours, including a demo of Pooch! https://dataverse.org/community-calls12:15 PM

Pooch is now on DataverseTV: https://groups.google.com/g/dataverse-community/c/GKJty_qNDbU/m/BtTnOrmCAwAJ6:26 PM

Pooch looks promissing, it would be great if we could download all the files, metadata and permissions associated with a said dataset and upload them to a different dataverse instance.9:09 AM

We asked our CERT team to do a blackbox security check of our dataverse installation, they found two vulnerabilities, one regarding the jQuery UI 1.13.0 version (https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2022-31160) and another regarding the absence of Anti-CSRF tokens. Should we create an issue

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pdurbin ? The version of dataverse we are using is v5.13.9:16 AM

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zbenta: yuck. Can you please email our security address? https://guides.dataverse.org/en/5.13/installation/config.html#reporting-security-issues12:21 PM

Z

zbenta: yuck. Can you please email our security address? https://guides.dataverse.org/en/5.13/installation/config.html#reporting-security-issues

I'll do so.

1:12 PM

Thanks!2:22 PM

Dataverse also has an issue with the session cookie being sent in cleartext, we tried using a session cookie from a coleague in my browser and I was able to impersonate him.3:07 PM

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zbenta: please email security about that too3:52 PM

Dataverse also has an issue with the session cookie being sent in cleartext, we tried using a session cookie from a coleague in my browser and I was able to impersonate him.

You can skip this one, it was a misunderstanding, as fot the others, we have sent an email regarding the issues.

3:54 PM

Thanks!3:56 PM

Sure thing, why not4:01 PM

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zbenta: done! Do you see an invite at https://github.com/IQSS ?5:09 PM

Hello everyone
I want to change the way to display the metadata citation in the subject field. I need the field to be displayed in URL format. I've been thinking about editing the tsv.9:04 PM

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Santiago Florez: if you get it working, please open a pull request! ❤️9:08 PM

Yes, hold on a moment9:09 PM

Interesting. And where does "Chemistry" link to?9:15 PM

when I click on it, I search for that metadata in all Dataverses and datasets.9:16 PM

I see9:17 PM

i´ve modified the displayFormat in the tsv to "<a href='/dataverse/#{dataverse.alias}?q=""#VALUE""' target=""_blank"" rel=""noopener"">#VALUE</a>"9:17 PM

And maybe the same for author. If you click an author, you see all the datasets by that author?9:17 PM

Noup, I just need to change that field9:19 PM

did you reload citation.tsv? with curl?9:24 PM

jmmm no9:28 PM

Once I run the curl command, should I see changes to a new data set? or on all the datasets that I had created9:41 PM

both10:52 PM