- poikilotherm (CEST,UTC+2)But of course something might have gone wrong there
- pdurbincontainerization working group meeting in 5 minutes: https://ct.gdcc.io
- Miguel SilvaAs soon I finish prototyping my smart DAQ with swarm capabilities I intend to take a peak at the dataverse source code to propose some improvements in regards to live data acquisition and open science ... Almost there
In reply to
pdurbincontainerization working group meeting in 5 minutes: https://ct.gdcc.io - Here's the newest smart DAQ with SWARM capabilities
- Available on my public GitHub profile to anyone use
- ( Open hardware with CC licensing )
- @archive:matrix.org joined the room
- pdurbinNew logs for this channel! Check 'em out! https://archive.matrix.org/r/dataverse:matrix.org
- pdurbinI just switched us over: https://github.com/IQSS/chat.dataverse.org/pull/24
- poikilotherm (CEST,UTC+2)Fancy pants!
- pdurbinI know right
- pdurbinMy daughter is stage crew for her 8th grade musical, Finding Nemo Jr., premiering two hours from now! I'm off! Have a great weekend! 🐟️
- imlostlmao joined the room
- tosigus joined the room
- Don SizemoreD@poikilotherm
dataverse.files.directory
is only used for temporary files these days, correct? I'm asking because I ran acrosstarget/classes/META-INF/microprofile-config.properties:dataverse.files.directory=/tmp/dataverse
- poikilotherm (CEST,UTC+2)No it's not!
- There is a list in the docs where this stuff is used
- (I asked myself the same thing when going for Mpconfig)
- This is a sane default for most installations and development
- Btw this directory is the default which had been present in the code before as well
- pdurbina pre-existing condition 🤒
- Don SizemoreD@poikilotherm if u hapi i'm hapi, just double-checking
- pdurbinAwesome thread about running Dataverse in containers for API testing: https://dataverse.zulipchat.com/#narrow/stream/377090-python/topic/containers.20for.20API.20testing
- pdurbinCommunity call in a little under 3 hours, including a demo of Pooch! https://dataverse.org/community-calls
- pdurbinPooch is now on DataverseTV: https://groups.google.com/g/dataverse-community/c/GKJty_qNDbU/m/BtTnOrmCAwAJ
- zbentaZPooch looks promissing, it would be great if we could download all the files, metadata and permissions associated with a said dataset and upload them to a different dataverse instance.
- zbentaZWe asked our CERT team to do a blackbox security check of our dataverse installation, they found two vulnerabilities, one regarding the jQuery UI 1.13.0 version (https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2022-31160) and another regarding the absence of Anti-CSRF tokens. Should we create an issuePpdurbin ? The version of dataverse we are using is v5.13.
- pdurbinZzbenta: yuck. Can you please email our security address? https://guides.dataverse.org/en/5.13/installation/config.html#reporting-security-issues
- Zzbenta: as for moving datasets from one installation to another, I believe this is now possible using the BagIt format.
- pdurbin
This message is being deleted (typo)…
- Zzbenta: for more on round trip and BagIt, please see https://groups.google.com/g/dataverse-community/c/07h0Ca-Ai1I/m/19U7Xlt7AwAJ
- zbentaZZzbenta: yuck. Can you please email our security address? https://guides.dataverse.org/en/5.13/installation/config.html#reporting-security-issues
I'll do so.
- pdurbinThanks!
- zbentaZDataverse also has an issue with the session cookie being sent in cleartext, we tried using a session cookie from a coleague in my browser and I was able to impersonate him.
- pdurbinZzbenta: please email security about that too
- Zzbenta: also, this channel is logged so it's not the best place to talk about security 😅
- zbentaZ
Dataverse also has an issue with the session cookie being sent in cleartext, we tried using a session cookie from a coleague in my browser and I was able to impersonate him.
You can skip this one, it was a misunderstanding, as fot the others, we have sent an email regarding the issues.
- *
Dataverse also has an issue with the session cookie being sent in cleartext, we tried using a session cookie from a coleague in my browser and I was able to impersonate him.
You can skip this one, it was a misunderstanding, as for the others, we have sent an email regarding the issues.
- pdurbinThanks!
- Zzbenta: I can also give you access to https://github.com/IQSS/dataverse-security/issues if you like. Please just let me know.
- zbentaZSure thing, why not
- pdurbinZzbenta: done! Do you see an invite at https://github.com/IQSS ?
- Santiago Florez joined the room
- Santiago FlorezSHello everyone
I want to change the way to display the metadata citation in the subject field. I need the field to be displayed in URL format. I've been thinking about editing the tsv. - pdurbinSSantiago Florez: if you get it working, please open a pull request! ❤️
- Do you have a screenshot or a mockup of how you would like it to look?
- Santiago FlorezSYes, hold on a moment
- pdurbinInteresting. And where does "Chemistry" link to?
- Santiago FlorezSwhen I click on it, I search for that metadata in all Dataverses and datasets.
- pdurbinI see
- Santiago FlorezSi´ve modified the displayFormat in the tsv to "<a href='/dataverse/#{dataverse.alias}?q=""#VALUE""' target=""_blank"" rel=""noopener"">#VALUE</a>"
- pdurbinAnd maybe the same for author. If you click an author, you see all the datasets by that author?
- Santiago FlorezSNoup, I just need to change that field
- And I've tried running solr's update***.sh. I don't know if I need to do something else.
- pdurbindid you reload citation.tsv? with curl?
- Santiago FlorezSjmmm no
- I gonna try
- Santiago FlorezSOnce I run the curl command, should I see changes to a new data set? or on all the datasets that I had created
- pdurbinboth
- Ramin joined the room
- RaminTHello, I am trying to add a new metadatablock (for local contexts labels). I could add my tsv with the api endpoint. However whenever I want to save a dataset with some fields of that metadataset, I get: "The metadata could not be updated. If you believe this is an error, please contact Root Support for assistance.". This is the tsv file that I started: https://github.com/RIDAGOP-IDS-Toolkit/tklabel/blob/main/localcontexts_dv_metadatablock.tsv
- RaminTActually, I just notice, that with the latest version of the tsv, the metadata of a dataset DOES update, even tho it still shows the same error message
In reply to
TRaminHello, I am trying to add a new metadatablock (for local contexts labels). I could add my tsv with the api endpoint. However whenever I want to save a dataset with some fields of that metadataset, I get: "The metadata could not be updated. If you believe this is an error, please contact Root Support for assistance.". This is the tsv file that I started: https://github.com/RIDAGOP-IDS-Toolkit/tklabel/blob/main/localcontexts_dv_metadatablock.tsv - poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide?
- RaminTNo! I didnt read that section :) thanks!
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinDon't mind me, I'm just testing a Matrix threads thing: https://github.com/IQSS/chat.dataverse.org/issues/16
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinOne more post. Still testing. Please ignore.
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - RaminTafter updating schema, it cannot reload. I am getting a 500, and in the response trace I see (down in the trace): "...Duplicate field definition for 'accessToSources' [[[accessToSources{type=text_en,properties=indexed,tokenized,stored,useDocValuesAsStored,uninvertible}]]] and [[[accessToSources{type=text_en,properties=indexed,tokenized,stored,useDocValuesAsStored,uninvertible}]]]\n" the field "accessToSou" is not from me. its the very first field in the file.
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - luckily I have a backup of the schema :). I could reload that... I'm gonna try it again and look how the target-schema looks like after update-fields
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinYeah, it sounds like your schema.xml file may have gotten trashed. 😅
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - RaminTindeed that field (and probably all of them) are twice in field and copyField
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - well is it ok to just manully copy my new field into the schema file?
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinOh! Just one field? Sure, I'd try just adding it to schema.xml
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - RaminTno not one... but an overseeable number, for now :)
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - sorry "fields" :)
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinYou should see your new fields at curl http://localhost:8080/api/admin/index/solr/schema
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - You can copy and past from that output.
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - That's what the script does. It tries to automate this.
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - RaminTyes, piping that file to the update-fields.sh trashed it. I am just copy over what I need.
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - pdurbinThis is documented at https://guides.dataverse.org/en/5.13/admin/metadatacustomization.html#updating-the-solr-schema
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - TRamin: oh hey, would you be able to shoot me a description for your demo at https://dataverse.org/dataversetv ?
- RaminTsure! here you go: The RIDAGOP (Indigenous data sovereignty) toolkit (https://toolkit.ridagop.net/) allows developers to create generic data-management processes, connect them to data-repository systems. This demonstrates 2 processes; adding Local Contexts Labels to datasets and how to create a customizable data access application processes.
In reply to
pdurbinTRamin: oh hey, would you be able to shoot me a description for your demo at https://dataverse.org/dataversetv ? - ok. manually adding them worked. and saving the dataset goes through ! :) I might write a python script to the update in the future. not sure why the update-fields didnt work
In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide? - * ok. manually adding them worked. and saving the dataset goes through ! :) I might write a python script to do the update in the future. not sure why the update-fields didnt work
- pdurbin
In reply to
pdurbinTRamin: oh hey, would you be able to shoot me a description for your demo at https://dataverse.org/dataversetv ?TRamin: thanks! Are you slides online? If so, I can add a link. In reply to
poikilotherm (CEST,UTC+2)Did you adapt your Solr schema as described in the Metadata Customization Guide?TRamin: please feel free to open an issue about it: https://github.com/IQSS/dataverse/issues- pdurbinHave a great weekend, everyone!
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